CAST

• CAST package
  • CAST module
    • CAST_MARK()
    • CAST_STACK()
    • CAST_PROJECT()
  • Subpackages
    • CAST.models package
      • CAST.models.aug module
      • CAST.models.model_GCNII module
  • CAST.CAST_Mark module
    • train_seq()
    • delaunay_dgl()
  • CAST.CAST_Stack module
    • reg_params
      • reg_params.theta_r1
      • reg_params.d_list
      • reg_params.mirror_t
      • reg_params.translation_params
      • reg_params.theta_r2
      • reg_params.alpha_basis
      • reg_params.iterations
      • reg_params.dist_penalty1
      • reg_params.attention_params
      • reg_params.ifrigid
      • reg_params.mesh_trans_list
      • reg_params.attention_region
      • reg_params.attention_params_bs
      • reg_params.mesh_weight
      • reg_params.iterations_bs
      • reg_params.alpha_basis_bs
      • reg_params.meshsize
      • reg_params.img_size_bs
      • reg_params.dist_penalty2
      • reg_params.PaddingRate_bs
      • reg_params.dataname
      • reg_params.bleeding
      • reg_params.diff_step
      • reg_params.min_qr2
      • reg_params.mean_q
      • reg_params.mean_r
      • reg_params.gpu
      • reg_params.device
    • get_range()
    • prelocate()
    • Affine_GD()
    • BSpline_GD()
    • J_cal()
    • alpha_init()
    • dJ_dt_cal()
    • dJ_dtheta_cal()
    • theta_renew()
    • affine_trans_t()
    • torch_Bspline()
    • BSpline_GD_preparation()
    • BSpline_GD_uv_ij_calculate()
    • B_matrix()
    • get_dxy_ffd()
    • BSpline_renew_coords()
    • reg_total_t()
    • FFD_Bspline_apply_t()
    • rescale_coords()
    • mesh_plot()
    • plot_mid()
    • corr_heat()
    • prelocate_loss_plot()
    • register_result()
    • affine_reg_params()
    • CAST_STACK_rough()
    • coords_minus_mean()
    • coords_minus_min()
    • max_minus_value()
    • coords_minus_min_t()
    • max_minus_value_t()
    • corr_dist()
    • region_detect()
  • CAST.CAST_Projection module
    • space_project()
    • average_dist()
    • group_shift()
    • physical_dist_priority_project()
    • sparse_mask()
    • cosine_IDW()
    • IDW()
    • evaluation_project()
    • cdist_hist()
    • confusion_mat_plot()
    • cdist_check()
    • link_plot_3d()
  • CAST.utils module
    • coords2adjacentmat()
    • hv_cutoff()
    • detect_highly_variable_genes()
    • extract_coords_exp()
    • Harmony_integration()
    • random_sample()
    • sub_node_sum()
    • nearest_neighbors_idx()
    • non_zero_center_scale()
    • sub_data_extract()
    • preprocess_fast()
    • cell_select()
    • get_neighborhood_rad()
    • delta_cell_cal()
    • delta_exp_cal()
    • delta_exp_sigplot()
    • delta_exp_statistics()
  • CAST.visualize module
    • kmeans_plot_multiple()
    • add_scale_bar()
    • plot_mid_v2()
    • plot_mid()
    • link_plot()
    • dsplot()